Protein Info for ABIE51_RS13130 in Lysobacter sp. OAE881

Annotation: autotransporter serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 999 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF00082: Peptidase_S8" amino acids 109 to 396 (288 residues), 121 bits, see alignment E=6.2e-39 PF03797: Autotransporter" amino acids 729 to 978 (250 residues), 121.5 bits, see alignment E=5.6e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (999 amino acids)

>ABIE51_RS13130 autotransporter serine protease (Lysobacter sp. OAE881)
MEGMPTRAPLARGVMLGLCVMGLVGCGGGGGGGNVRSDPPPAPAPGGGAMTPTTPTTPPP
VTSPPPSDPSPTPPAPAPTEPDVPGHGPIVDAHLYFTRAYEAQEQGLTGKGVGIVVIDTG
LKRDHPALASRVRYSADTVAPGTYTAVDTSGHGTQVAQIAAGSKVGRWPRGVAPEAHLTS
LRVITDEAAKPGGKQKLTAADPLITAIGSEGYGGRGRVLNIATDALWWDDERVGASLASV
LSGAVTIGADSQLAVVPTGNAGASQPSQLAMLPALSEKPEVGLYPTQLKRGWINVGAVQS
TDTNKLASYSNACGDTRDYCMVAPGDVTVTALDATAEAPTYQQVHGTEYASAQVAGAAAL
VWQRFPTLSSEQVQQILLRTAKDLGDPGVDAAFGWGLLDVAKAVRGPTYFSGGDFKVELG
SRTTWTFLNPISGDGGLRVHSTDGTFSTLSLEAPTTYTGTTTVQGPILTSGFSMKSPVVV
EGGIFQASGGTYEGDLRSVAQGTLAITPDSYRQPLVVKGDIDNQAKFTYQTSTSADAVFE
GDYTQGSSADYQFMLGDRPMHLKGRATLDGELHVIGMRPGYIANDHTTILIADGGVGGRF
WRVIASQYLLLESTLMQDANSVWLDVVRAEARSLAINAALAPAAVGGAERLDDAFDRIDA
LTRQGASPEADFVDAAGRLQRIASMDVLDRSLASLSGELHDADSAFAMMAIDDSRNALES
RLDSFAGGSAAGAWSRSLDGKRQWSAFDVDSRGWMLGFDRLWNAHLTVGTLLSETSGNAW
HSQRFDRERNRQVDAQVYASWNLGEGGFVLGSAGFGHMQRWLQREVVLGDEAYRVSSDYA
HRYGALSLQSGRRIPFGGSTVTPYLGVQALALARDGFSEQGASGFGLTTNDASMSATQAL
AGARWSHEWLGATTRWALSGRIEWQHLLSQSGETLQARFTGMDAWAPIVADGLDRNVGLF
GLGLEAGIGRRNTLRFDLDARHAGTEQWTGAMATWTTAF