Protein Info for ABIE51_RS12570 in Lysobacter sp. OAE881

Annotation: glycine zipper 2TM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05433: Rick_17kDa_Anti" amino acids 117 to 157 (41 residues), 41.7 bits, see alignment 4.4e-15

Best Hits

KEGG orthology group: None (inferred from 66% identity to sml:Smlt3210)

Predicted SEED Role

"probable exported protein YPO1624"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>ABIE51_RS12570 glycine zipper 2TM domain-containing protein (Lysobacter sp. OAE881)
MNKNILAVALASLLVGGVAVAAFNSFSNKGTAPAASADGQLLPGQDGDTAANGAIDANKV
EYADVTNVKSITEKEKLYATVIGSDAIRETSTTSTPREVCEDVVVQERAPERDGNVGGTV
AGAVIGGLLGNQVGGGNGKKAATVGGAVAGGFIGNQIDKRHVGGKVTSRTERQCHTVSST
SESSRVVGYNVTYRNPDGTTGTMRTDSKPGSRILLGDEDKVVGYDVTYRYNGAEQTIRMD
ERPVAGRLPVIDGQVVTQTASASAPTRG