Protein Info for ABIE51_RS12410 in Lysobacter sp. OAE881

Annotation: patatin-like phospholipase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 57 to 67 (11 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details PF01734: Patatin" amino acids 13 to 322 (310 residues), 92 bits, see alignment E=3e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>ABIE51_RS12410 patatin-like phospholipase family protein (Lysobacter sp. OAE881)
MPAIKSPQDVHYLAFQGGGGLGFAYLGAIEAFQALNVLPVVPGACGQLRGVSGTSAGAIT
ALLVSLGCTYADLESIFSSRSEFEAFFDDPWPGKCRGLEPDNLYDARVRSPGIDRESRSV
IESVQEVISWIKDLVGTGPTLAAALPAIQVLGPITAMMLALSLGRKSAIEKIGIDAPFLK
RACERPFDYLSNLVNERGIYPGFAVRTFLAKSMRRLVARIPNWRLHSRAPDPAKLSFAEL
KAITGIELKVCATNLSQRRSVIFSAVTTPDFPVIEAVGMSACYPFVFKPVFINAPSHDLV
LGQLRGLWLDGGILNNIPIHSFDDVSAGSVGRLNKHVLALLLHEGAPQSISNYRDPMRDE
SPLLGLAEDMYSTLLAPGRAGQFRSPEELLQTVDLFTYELSLLELSPTKSTAKLPLQEAR
RAVLDYFNVRR