Protein Info for ABIE51_RS12010 in Lysobacter sp. OAE881

Annotation: low temperature requirement protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 279 to 302 (24 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details PF06772: LtrA" amino acids 18 to 383 (366 residues), 375.7 bits, see alignment E=1.4e-116

Best Hits

KEGG orthology group: None (inferred from 62% identity to pfl:PFL_1485)

Predicted SEED Role

"Bll5714 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>ABIE51_RS12010 low temperature requirement protein A (Lysobacter sp. OAE881)
MTPASPLLRQRGTADGNRVAMVELFFDLVFVFAVTQLSHTLLEHLTVQGALQTLLLFLAV
WWLWIFTSWVTNWLDPDRTPVRVMLFVLMLGGLLLSSSIPQAFGERGLMFGVVFAAMQVG
RTAFVAIAMRNHHRVLHENFMRIALWLALSGTLWVAGGLNDGATRVALWTAAVAIEYCAP
ALYFYVPGMGRSSTIDWDVDGHHLAERCALFVIIALGESILVTGATFAAGAWTTPTITAF
IVAFLGSVAMWWIYFDTGAERASQRIEHSEDPGRQARLAYTYLHLLIIAGIVVCAVADEL
ALAHPDHFEGDGRAAIAAMIGGPMLYLLGVALFKWVCNERRGPPLSHCAGIVMLAVLAPI
ALAHLLSPLALATATTLVLMIVAMWETLALRRR