Protein Info for ABIE51_RS11945 in Lysobacter sp. OAE881

Annotation: SDR family NAD(P)-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF08659: KR" amino acids 25 to 182 (158 residues), 34.6 bits, see alignment E=3.7e-12 PF01370: Epimerase" amino acids 27 to 196 (170 residues), 21.3 bits, see alignment E=3.2e-08 PF00106: adh_short" amino acids 27 to 209 (183 residues), 171.8 bits, see alignment E=2.5e-54 PF13561: adh_short_C2" amino acids 30 to 218 (189 residues), 122.6 bits, see alignment E=4e-39

Best Hits

KEGG orthology group: None (inferred from 67% identity to cai:Caci_5146)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>ABIE51_RS11945 SDR family NAD(P)-dependent oxidoreductase (Lysobacter sp. OAE881)
MSRQPAHDPETPSSANDGGLSDARTWFITGASSGLGRALAETVLARGDRAVLAARGVDRL
RELVSAFPARALAVAMDVTDRAQRAAAVDQALAHFGRIDVLVNNAGIDFLGAIEEQREED
YRAQFEVNFFGPVEMIRLVLPGMRARGKGTIVNMSSMDGLSSLPANGYYSSSKFALEGLT
EALWQELEPLGLRAFLVEPGSFRTGIEQRTKFSGESIAAYAATSGAFRDLMGTLTPDMFP
GDPARAAEATYEVVASQPDRHWVVLGSDAQRRIQAKLALLQAEVDAGETMALSTDHPGSA
RAVL