Protein Info for ABIE51_RS11065 in Lysobacter sp. OAE881

Annotation: S1 family peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF02983: Pro_Al_protease" amino acids 117 to 177 (61 residues), 50.3 bits, see alignment E=2e-17 PF00089: Trypsin" amino acids 217 to 384 (168 residues), 49.3 bits, see alignment E=5.9e-17

Best Hits

Predicted SEED Role

"Streptogrisin-C precursor (EC 3.4.21.-) (Serine protease C) (SGPC)" (EC 3.4.21.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.-

Use Curated BLAST to search for 3.4.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>ABIE51_RS11065 S1 family peptidase (Lysobacter sp. OAE881)
MRKFASWARRGLILLSPIPLFAAMTAHAADPSDTLHASVRAAMERDLNLTSNQLSQYLRI
ERLANVQEKQLAKAQGRAFAGSWIERKANGEFHVVVATTSLRAAKGTADVEVRNARHSLV
QLETAKGQLDGLLARAGKVPAGVYGWYVDLPRNSLVVSVGKGREQAGIDFVAASGADVQT
VRIETAEEQPSLRVALEGGLGYLRNPGDGYLYACSIGFPVAQGGYVTAGHCGDAGEPVYF
EPSQWTLGPKIGSFVASSFPAAGQTGNDFAWVKVDSGHTLAPTVDGYGNGDVTVRGSTEA
AVGAAICRSGRTTGWRCGTIEAKNQTVSYSTGETILNLTRTTACSEGGDSGGSFITGAGQ
AQGVLSGGSGSCKGKTPNNRTRSFYQPVLPILQNYNLTLLTGT