Protein Info for ABIE51_RS10960 in Lysobacter sp. OAE881

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13432: TPR_16" amino acids 36 to 89 (54 residues), 17.5 bits, see alignment 1.5e-06 amino acids 67 to 120 (54 residues), 33.5 bits, see alignment 1.5e-11 PF13181: TPR_8" amino acids 63 to 96 (34 residues), 17.5 bits, see alignment 1.1e-06 amino acids 97 to 121 (25 residues), 13.8 bits, see alignment (E = 1.7e-05) PF14559: TPR_19" amino acids 73 to 119 (47 residues), 32.5 bits, see alignment 2.7e-11 PF13414: TPR_11" amino acids 77 to 111 (35 residues), 32.5 bits, see alignment 1.7e-11 PF13431: TPR_17" amino acids 86 to 117 (32 residues), 28.5 bits, see alignment (E = 3.5e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>ABIE51_RS10960 tetratricopeptide repeat protein (Lysobacter sp. OAE881)
MRRPDRLPGGIGRIVCLCVAMLAASAVNAQDAMSDAQSLLSQKRYAEALERLAPQESANA
QDASYQYVLGRAALGAGDAERARVALERSIELDPDNANAHLALGRAYHALGQHANAINQF
EIAMHFENLPPDLITQSQIYDDAAREALDEGRRTSTFGYAATGIGRYRVNSTRGTNTFGG
GDRRETFYNLRIGGGLSHALSNGTSLDGTLDYRHREYDAGSRDDRDLRWSFAASHGVNDS
RLSGGIRGRVSYRGNGDYRNDVAGFFDYTHNMDVESQLTAGVSVQRRRYPEGPLRDRSRT
TTTGSVGWSHSFNDGAANFGITGHAGRNTATSRPDGDSDVFGATANLDWTFSDTLDAFVF
VWWERDDFSADDVRFHPDERDEAATFSRKDNLYEGGAGLVWAFMDGWSLRPELLYIRDQS
NVVALNYSSTEVWLNVRADF