Protein Info for ABIE51_RS10255 in Lysobacter sp. OAE881

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 28 to 48 (21 residues), see Phobius details PF01494: FAD_binding_3" amino acids 29 to 61 (33 residues), 23.3 bits, see alignment (E = 1.3e-08) PF01266: DAO" amino acids 30 to 371 (342 residues), 160.2 bits, see alignment E=3.8e-50 PF00890: FAD_binding_2" amino acids 30 to 203 (174 residues), 34.5 bits, see alignment E=5e-12 PF07992: Pyr_redox_2" amino acids 30 to 114 (85 residues), 27.5 bits, see alignment E=7.6e-10 PF12831: FAD_oxidored" amino acids 30 to 62 (33 residues), 27.2 bits, see alignment (E = 9e-10) PF13450: NAD_binding_8" amino acids 33 to 60 (28 residues), 25.2 bits, see alignment (E = 5.9e-09) PF00355: Rieske" amino acids 421 to 497 (77 residues), 44.1 bits, see alignment E=5.4e-15

Best Hits

KEGG orthology group: None (inferred from 63% identity to psu:Psesu_2873)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>ABIE51_RS10255 FAD-dependent oxidoreductase (Lysobacter sp. OAE881)
MTTARTIPVWKNADDLSKWFVTDLDSHALDVVVVGAGIAGLSAALCLLREGRKVVVIDKE
GIGAGETLRTSAHLSNALDDRYYRLVRQHGDDGARLAAASHAAAIDWIEAVVEASGKDCG
FARVPGYLFAHDRDASNLGKEVEAANAAGLSATLLQASDALPASFGPVVRFERQAVVDVG
RYIQVLAAEVREAGGRFLRAEIVDIKGGSPCTISLRNGELKAKTVVAATNVPVHETGATY
MKQAAYRSYVVSGDAPADLPDALIWDDADPYHYIRKYVDEDGVAKIIVGGEDHKTGQDDD
PEAYVRLQAWTREHFPGATHFTHGWSGQIIEPVDGLAFIGRDPDHENVYLVTGDSGNGLT
HGTLAALLIADIAQGRDNPWEALYDPSRKPVRSAGEWIRENANAALQFRDWVRPADVDDP
QRIPLGTGAVLRRGAHRIACYRSGDGRLHTYNARCPHMGCVVRWSGEEKSWDCPCHGSRF
DGESGAILNGPTSEPLAPMELDPR