Protein Info for ABIE51_RS10210 in Lysobacter sp. OAE881

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 PF00072: Response_reg" amino acids 11 to 121 (111 residues), 66.8 bits, see alignment E=3.8e-22 amino acids 507 to 619 (113 residues), 73.7 bits, see alignment E=2.6e-24 PF00512: HisKA" amino acids 266 to 330 (65 residues), 48.1 bits, see alignment E=1.9e-16 PF02518: HATPase_c" amino acids 375 to 487 (113 residues), 96.8 bits, see alignment E=2.1e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (629 amino acids)

>ABIE51_RS10210 response regulator (Lysobacter sp. OAE881)
MANAHLLDRPVLLVDDTNATRYATRRMLTANGMEVIEAVTGEEALRLASGCDAVVLDVNL
PDLDGFEVCRRLRADPATQSLPVLHLSAQHMQDSDKVVGLEAGGDAYLTHPVGAGVLVAT
INALVRARKAERAQMSLRAQLASVIDSAPVAIAVFNAAGELTLGNDAFRDYAGSLSVEQR
ALPEFLSASFHAVRGGSGPLRGTATLERPGRPTAFMEWRVGLVDEESVVVVLADRTVEHT
LGLERESLLARERAARSEAETAYQTKDAFLALVSHELRNPLNTISMWSSMLQRPDARVHL
DQGLTAIERSAHLQARLLGDLLDVARASSGKLTVTTTPTDLAAVLRDVVASVDEMAAQRQ
IAIETDIDIPYAVLGDAPRLHQIAWNLLSNAIKFSEPGGVVKVTLADEDGHAVLSVHDDG
VGFDPDDATLLFERFRQAAHSRPSSAGGLGLGLSIVRELVLLHGGTVTAWSPGLGQGARF
DVRIPLTHAHADEQATASPAALSARDILVIEDEVETRRLMKLAFEEHGATVRDVGSAELA
LNLLGERRFDLIVSDVGLPFMDGFSLMQTLRRTEGPNRDAPAIAVTAYARDTDVERSREA
GFDAHVSKPVDIAGLLRRVATLLSERGGA