Protein Info for ABIE51_RS09910 in Lysobacter sp. OAE881

Annotation: ATPase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 PF06745: ATPase" amino acids 16 to 241 (226 residues), 130.5 bits, see alignment E=2.9e-41 amino acids 257 to 470 (214 residues), 86.3 bits, see alignment E=9.4e-28 PF13481: AAA_25" amino acids 259 to 378 (120 residues), 42.3 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: K08482, circadian clock protein KaiC (inferred from 76% identity to bbt:BBta_2398)

Predicted SEED Role

"Circadian clock protein KaiC" in subsystem Cyanobacterial Circadian Clock

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>ABIE51_RS09910 ATPase domain-containing protein (Lysobacter sp. OAE881)
MQSRSETQSSTGTRISSGNSGLDDILGGGLDADRMYLYEGKPGTGKTTLALEFLLEGARN
GEKALYISLSETEAELKLVASRHGWDLKGVEIFELVPPETTLDPTHELTVLHPVEVELGE
TTKLILDRVAELNPSRVVIDSLSELRLLAQSSLRYRRQVLALKHFFASRSCTVVLLDDMS
SAQDDLQLHSISHGVVLLEQLAIEYGAERRRLRVIKMRGMEFRGGFHDMKIRKGGLDIFP
RLVAAEHHSSFVGEFTPSGNAELDKLLGGGLERGTNALLIGSAGVGKSSLALSYAIAAAQ
RGERAAFFAFDEGRGTLEARARTLGMELQPALDSGLIILQQIDPAEMSPGEFAAIVRRRV
DEDGVRVVVIDSLNGYLNAMPDGRFLILQMHELLTYLGQQGILTILILAQHGMVGPADTP
LDISYLSDAVLMLRFFEYAGTVRRALSVVKKRSGHHEHTIREFQLSGSGLLLGPPLRDFH
GVFSGTPSYTGGDEPLLHGAHGTD