Protein Info for ABIE51_RS09300 in Lysobacter sp. OAE881

Annotation: TraB/GumN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 261 to 279 (19 residues), see Phobius details amino acids 291 to 319 (29 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details PF01963: TraB_PrgY_gumN" amino acids 16 to 233 (218 residues), 102.5 bits, see alignment E=1.9e-33 TIGR00261: TraB family protein" amino acids 24 to 394 (371 residues), 272.9 bits, see alignment E=2.2e-85

Best Hits

KEGG orthology group: None (inferred from 68% identity to xoo:XOO2174)

Predicted SEED Role

"Pheromone shutdown protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>ABIE51_RS09300 TraB/GumN family protein (Lysobacter sp. OAE881)
MSESLQALLERQPHAIVERDGVRYTLLGTAHVSQASVEAVRDAVGSGAFDAVAVELDPQR
LTALTDPDAMARMDLVEVIRKGKTALFAANLALAAYQRRLAEQLDVEPGAELKRAVLEAR
QRDLPVHLIDRDVGLTFRRASAGLGFWGRIKLGAGLMTALFVDEEVGEADIEKLKQGDML
ESSFSEFASDSPELYEAVIAERDRYMAARLRETHGDAREVLAVVGAGHLQGLARHLREET
RDPEAIRTELETVRKKSKTPWLGIAIVAFIVAAIGVGIWRGGFAMGADLLLQWVVCTAGF
AALGCALATAHPLSILTAAMFAPLKPFRLGVPTGTFSALTEARIRKPTYADFMSLRDDVQ
TVRGWYRNRVARVLLTFLLTNLGSMIGAWTGLFRIGGRLLH