Protein Info for ABIE51_RS08830 in Lysobacter sp. OAE881

Annotation: discoidin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1061 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03425: CBM_11" amino acids 25 to 123 (99 residues), 21 bits, see alignment E=4.3e-08 PF00754: F5_F8_type_C" amino acids 191 to 302 (112 residues), 54.5 bits, see alignment E=2e-18 PF17389: Bac_rhamnosid6H" amino acids 654 to 811 (158 residues), 26.6 bits, see alignment E=5.5e-10

Best Hits

Predicted SEED Role

"Hypothetical protein USSDB1E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1061 amino acids)

>ABIE51_RS08830 discoidin domain-containing protein (Lysobacter sp. OAE881)
MARRFAWAFALVPVMAFAQGVGEIRVLDDFESTTPWQVVTSDQVSGTLRTVPGADGQAVC
LDYDFNGVSGYAGLTREIPIDYPDNYAFSFQLRGDSPPNDLQFKVVDESGDNVWWVNKPR
YDFPKTWTPVVYKQRHITRAWGPAPDPTLRHSRRIEFTIYNSVGGKGSVCFDQLAFRKLA
PQDNSPLAGTASATAETRNGLARAAIDDAPDTAWRADVGAKQAPQFTLDLRKPREFGGLV
LDWLSGEHASDYRIELSDGGATWRTAREVRGADGGRDHIALPESEARFVRLTLLKAPAGR
IALSRLQVMPLAFAATPNDFVRSVAKDAPRGRWPRGFFGEQPYWTILGLDGGIEQGLIGE
DGAIETGKGGFSIEPFVVSDGTLVTWADVKTTQSLQDSYLPIPSVHWQHADFALDTTAFA
HGTRDDSHLTARYVLRNTSDRPRRYVFALAARPMQVNPPTQFLSTVGGVSEIRSISASAD
TITVAGRFPVQAGRAADSAFVSRFDEGEVVQRLARADWASFCSKGCERKAFGAVENQVED
ATGLASGALLYAVELAPGQSREFDWSVRLTGRDMATPKTIDAAKAQDATAALWRGKLDRV
QIQVPEQGQHVVDTLRTALAHMLISRIGPRLQPGTRSYSRAWIRDGAMIGEGLLRMGRED
VAAEFLRWYAPYQFDNGKVPCCVDDRGSDPVPENDSHGELIFTIAEVYRFNRDRAMLQAM
WPHVVGAFDYMEKLRLSERTEANRARNPAFYGMMPASISHEGYSAKPMHSYWDNFWALRG
YKDAVEIAQWLGKDADAKRFAASRDQFRDDLYASLRSATQQHGIDFLPGAAELGDFDATS
TTIALAPGGEQGRLPQDLLTNTFERYWREFVARRDGTREWKDYTPYELRTIGTFVRLGWR
DRAHEALDFFFADQQPRAWNQWAEVVSRTPRKPFFVGDLPHAWVGSDYVRSALDLFAYSR
DLDDTLVVAAGIPADWLAGEGVSVANLRTQYGPVGYRLRESDGALMLDIAPDTRLPPGGI
VFTWPYDTAPGATTIDGKPAQWHDGELRIGRAGARVRVALR