Protein Info for ABIE51_RS06085 in Lysobacter sp. OAE881

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 111 to 136 (26 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 308 to 328 (21 residues), see Phobius details amino acids 342 to 362 (21 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 328 (304 residues), 147 bits, see alignment E=7.2e-47 PF06779: MFS_4" amino acids 29 to 389 (361 residues), 51.4 bits, see alignment E=1.1e-17

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 77% identity to reh:H16_B2260)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>ABIE51_RS06085 MFS transporter (Lysobacter sp. OAE881)
MAATPLPASSAAPAGRLPLALYALTAGSFGIGCAEFVIMGLLLQVAADLHVSIAAAGMLV
SGYALGVFAGAPILTLLTRRMPRKAVLLALMGIYTVGNLACALAPDYTTLMIARVVTSLT
HGTFFGVGAVVATGLVPAERKASAISIMFSGLTLATLLGMPAGAWLGLHFGWRSTFWAMS
LVGLVSLAVIALLVPRSRDTSEPAPLREELATIARPQVLLGLLMTMLGFAGVFVVITYVQ
PLLTKLTGFSDAAVSPILLVFGGGMVAGNLLGGRLADRRATPALLGTLFALAAVLALMSF
VLHSPVLMVAFVGLLGVAAFATVSPLQLRVLGFAEGAGQNLASSFNIAAFNLGNAIGAWL
GGTVIEHGPGLATITWVASLVTVAGLLVALWSVRIERRAARVDDLPRDCAAEAA