Protein Info for ABIE51_RS05650 in Lysobacter sp. OAE881

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1174 signal peptide" amino acids 1 to 52 (52 residues), see Phobius details PF18883: AC_1" amino acids 640 to 750 (111 residues), 90 bits, see alignment E=1e-29 TIGR01414: outer membrane autotransporter barrel domain" amino acids 654 to 1174 (521 residues), 211.9 bits, see alignment E=8.6e-67 PF03797: Autotransporter" amino acids 891 to 1150 (260 residues), 117.7 bits, see alignment E=8.2e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1174 amino acids)

>ABIE51_RS05650 autotransporter outer membrane beta-barrel domain-containing protein (Lysobacter sp. OAE881)
MEQAYRTRGRAQWKHRHRLAREIGIVLASARLSRVWLPGSLLLACAPSALAVGPGAVTGP
VNVTSGTVQVVADTVVTSSGSNPGANVTGGTLDIDSNAGGAPGLIRFITASGNAFQASGT
GVINARSNFAITTTSGHAVLASSGGSIFLTGGNLVGSGLGGGLIALGGRIDAGSVAYLNN
TTSASNGQGAIADSGGTINLLGNVSLDTAGNQAVGLGAGANSAINVTGPVIVTLRGTNAM
GIYLHDGGQVNLPTGTTINHYGTGNVGVIVDNTTASLASGLRLNFNTLPASVSTGANSSL
GVLAANNANTTFENLTVAGPGVGGGVWALSGAAATGVATTADARVTLNGASVITLGEVYV
SNTETHVPAWRLLISPTLANASPSLAISFSNSFGTPHAALRASATGAGSADAQALITSNG
TTINVPTINGIAAYAGQNNPGDSRIVLNNNNVTTTGSQSRGLMVVSNGTIDATGTTVNTS
GGSAALRLETFTAPGVINLTNSTVRATGANTRGISSTGLGAANVNRVTMSGGTLSSQSGV
TMVADGLFNMAMSNGASVSTDATYVLYSAARTSGTQTLVNLGLTGNSRLRGDAYADVGAE
TNISLADRSQWNGAAYRVTDVTVDASSQWTVTADSLLTGDLTNTGVVAFAPPVNGNFKRL
ATHNYFAGSGTLAVNTFLDTDGSPSDVLIIDGGEATTGTASVMVANAGGAGALTSGDGIL
VIDAVNGGITGTNAFTLGSLVLAGAYEYTLQRGSRDGSSPSNWYLRSTLDCTLDPSAPGC
DIPPDPPPPDPDPPDPDPPDPPPTPPDPPEPPTPPTPPDPPVPPTPTPPDPPTPFPPVPN
YRAEVSLYAALPAMALRFGWTTLGNLHERVGEEEQLRDRDDLQSRTSFNGAWVRVIAEDG
DVEGDRRGILGTGPKYDFDVLALQVGTDVWREQHDDDHRDHAGLYVGQGRIKSEVTHYNR
LRVGKDKVEGTSLGGYWTHFWPCGSYVDTVLQGTWSDMESHSVRGLRLKSDSFGWAASVE
GGMRLKCERAEEESRFEPQAQIVYQRVDDFEGDDAVAQVRFRDAESLAARLGVRWTRDWR
LEPASDGAPRLMSGWLRANVWHEFKGEPLTLFSSGNGDLPFQADISGTWWQLNAGMTREL
GRTTSLYANIGYQRSFGGNRFDAWDGKLGMRWNW