Protein Info for ABIE51_RS04675 in Lysobacter sp. OAE881

Annotation: metal-dependent hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 86 to 115 (30 residues), see Phobius details amino acids 130 to 140 (11 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details PF04307: YdjM" amino acids 1 to 163 (163 residues), 106.4 bits, see alignment E=5.8e-35

Best Hits

KEGG orthology group: K07038, inner membrane protein (inferred from 65% identity to pau:PA14_65580)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>ABIE51_RS04675 metal-dependent hydrolase (Lysobacter sp. OAE881)
MPTIFTHAVVPLAMGIACGTRRLPPRLIAAGMLAAMLPDADVVAFKLGIAYADDFGHRGA
SHSLSFAGVVAALGAWLHRPLQTRPWIAALWLFACTASHPLLDSLTNGGLGVALWWPWSD
ARVFAPWQPIAVSPIGSGFFSARGAAVMASEARWVWLPCAALAGAGLALRRAVSSRP