Protein Info for ABIE51_RS04595 in Lysobacter sp. OAE881

Annotation: DUF1800 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF08811: DUF1800" amino acids 69 to 575 (507 residues), 290.6 bits, see alignment E=1.3e-90

Best Hits

Predicted SEED Role

"FIG01201902: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>ABIE51_RS04595 DUF1800 domain-containing protein (Lysobacter sp. OAE881)
MDIRQGARAGMLALALCTLAACGGGGGGDDGGGTYVPPASGGGGGGTPSTPEPPAPYPDL
PATDADAARFLTQATFGPTATEIARVRQIGYKRWIDDQLAQTPTLILPHLQQLVTNGVAT
PTPQNRRNYWLWQTANAPDQLRMRMAFALSEIMVVSDREVADGNATVFRIADYQDTLARG
AFGSYRTLLEKVSVHPAMGYFLSHVGNRKADPRRNITPDENYGREVMQLFSIGLVKRNKD
FSPVLDANGQTIPTYDEQVVSAMARVFTGWTYAGQTDAQFGRGDNTSYAPMECHPAFHDD
QPKQIFDGIVVSEGNNCTASMTKTVQALADHSNTAPFISRQLIQRFVTSNPTPQYVERVA
KVWDTSKGDLGQVIRAILLDTEARLPPPNGSFGKPREPLVKLATLWRAFNAQYVPNAMGE
VRFAFSNAGDLANSLQQDSQRAPSVFNFFEPDYRLPAADGVQGMFAPEFQILTEATYLSM
LNQHDSLVWNNAATPPTTTPNAPYLDLTKLTTMAEGNDHAGMVAQVNLLLFHGALSSANA
QAMVGMLDRLGAAKETAANRAKSLVLLAMATPEFAIQR