Protein Info for ABIE51_RS04565 in Lysobacter sp. OAE881

Annotation: type II secretion system protein GspM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details PF10741: T2SSM_b" amino acids 93 to 209 (117 residues), 80.2 bits, see alignment E=5e-27

Best Hits

Swiss-Prot: 62% identical to XPSM_XANCP: Protein XpsM (xpsM) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02462, general secretion pathway protein M (inferred from 62% identity to xca:xccb100_3687)

Predicted SEED Role

"General secretion pathway protein M"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>ABIE51_RS04565 type II secretion system protein GspM (Lysobacter sp. OAE881)
MAVDPTHARPQVQAATATPRIGRDQWLALGLLLAALLLGYLILVHPWFTAPMLEANERVE
SLQQRELRQRMQLQQAPQVQQRLAQVRAQQARSPGFLPESSAELATAGLVQRLERVVAEA
SPGNRSCAISNRSPLSEPRRDRYPRVIVQVRLRCGTPELMSVLYALEAGSPRLFVGNLNL
LSSRGYFLPGANQPSGDGGLDVSFDLYGYLRPSPNVAEVSRAPR