Protein Info for ABIE51_RS03320 in Lysobacter sp. OAE881

Annotation: TniB family NTP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 180 to 197 (18 residues), see Phobius details PF05621: TniB" amino acids 20 to 147 (128 residues), 61.6 bits, see alignment E=7.1e-21 amino acids 165 to 213 (49 residues), 25 bits, see alignment 1.2e-09 PF13401: AAA_22" amino acids 47 to 198 (152 residues), 47.3 bits, see alignment E=2.7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>ABIE51_RS03320 TniB family NTP-binding protein (Lysobacter sp. OAE881)
MSAKKEDLRKYRDVVQTLRVEHAAYTELMEELKAAYDDIGLSAVDVCLIVLGEPRTGKSS
VATDMLDERVAKQSADSLTRNVVYAVAPSPATVKSLLECLLYGLGDPHWNRGTVSSMTQR
LYTLLKAAKCRMIILDEFQHLCAVDGSDSESATGAAGARRPHRSSGAVQRQKATADWLKV
LLETTGIGFVAVGLPHAASVIQSNRQLSGRFDPPLRLPVFDWCEDASRAQFLGILQQFQK
GLEPFQFPPFDSDAMGLRMYLASAGRIGLLAKFLDRAVRNAIRAKTVQIRLEDLAEAYRA
SIWSAPLFPVKGGPFGADFSALQLRGVQEQVLADASKEPCADVSGAVKVYGDSNVQPSCK
PGPTNKARPARAPKPPRKKPRARSRGSAARKLAGVL