Protein Info for ABIE51_RS01625 in Lysobacter sp. OAE881

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF00392: GntR" amino acids 21 to 83 (63 residues), 68.2 bits, see alignment E=3.9e-23 PF07702: UTRA" amino acids 103 to 239 (137 residues), 127.2 bits, see alignment E=4.3e-41

Best Hits

Swiss-Prot: 30% identical to YEGW_SHIFL: Uncharacterized HTH-type transcriptional regulator YegW (yegW) from Shigella flexneri

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 53% identity to ccr:CC_0445)

Predicted SEED Role

"Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>ABIE51_RS01625 GntR family transcriptional regulator (Lysobacter sp. OAE881)
MQDYLVNEFRRQADARRAPAYQHLRRTLQHAIENGELTPGQALPSERELTKLLDLSRVTV
RKAISGLVADGLLMQRQGSGTFVSERIVKSFSKLTSFTDDLRARGLDPKSRFIERGVGEV
TPDEAMALNLSPGAQVVRYYRLRIADDMALALERTVVPQTVLADPSLVENSLYETFQKMG
LRPTRALQRLRAIAFDAEQARLMNLPEGSPGLFIERRTFLDDGRVVEYTRSFYRGDAYDF
VAELQSE