Protein Info for ABIE51_RS01060 in Lysobacter sp. OAE881

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 440 to 462 (23 residues), see Phobius details amino acids 472 to 495 (24 residues), see Phobius details amino acids 548 to 567 (20 residues), see Phobius details amino acids 878 to 898 (21 residues), see Phobius details amino acids 905 to 924 (20 residues), see Phobius details amino acids 930 to 953 (24 residues), see Phobius details amino acids 978 to 997 (20 residues), see Phobius details amino acids 1009 to 1033 (25 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 3 to 1042 (1040 residues), 1138.8 bits, see alignment E=0 PF00873: ACR_tran" amino acids 3 to 1033 (1031 residues), 1115.7 bits, see alignment E=0 PF03176: MMPL" amino acids 341 to 496 (156 residues), 38.6 bits, see alignment E=9.7e-14 PF02355: SecD_SecF" amino acids 342 to 498 (157 residues), 24 bits, see alignment E=3.5e-09

Best Hits

KEGG orthology group: None (inferred from 70% identity to bcj:BCAM1946)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1059 amino acids)

>ABIE51_RS01060 multidrug efflux RND transporter permease subunit (Lysobacter sp. OAE881)
MDFSKFFIDRPIFAAVLSIVIFAAGLISIPLLPIGEYPEVVPPSVVVRTVYPGANPKVIA
ETVATPLEESIRGVEGLMYVKSVASSDGVLQITVTFRPEVNADEATVRVQNRVSQALARL
PEDVRRQGVTTQKQSPVFLMVVHLTSPNGKYDTLYLRNYLRLHIKDQLASIPGVGEAQPF
GGGDYAMRLWLDPDKVASRGMTASDVLRAVREQNIQVSAGQLGAEPMPNGSQFLTPINAR
GRLETPEEFGNIVLKGGDGGEVVRLSDVARIELAAGDYTMRARLDGQNAAAIGIFQAPGA
NALQIRDEVIRRMDEAAKRFPPGVEYKSIYDTTIFVRDSIKSVVTTLLEATLLVVLVVIL
FLQTWRASIIPLIAVPVSVVGTFAALYLLGFSINTLTLFGLVLAIGIVVDDAIVVVENVE
RHIEDGHTPLEAAHMAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAIST
VISAINSLTLSPALAARLLKPHGAPKDLLSRGIERGFGWIFRPFNRFFGTAAERYQNGVA
KVLGRRGAVFVVYAGLLLATGLMFQLVPRGFVPVQDKSYLIAGIKMPEGSSIERTDAALK
KIGEIAMSIDGVQNDVAFPGLNPLQFSNTPNYGVTFINLKPFGQRTRSAEEINAELSQKI
SAIQEGFAFSLQPPPIQGLGNGSGYSLYIEDRGNLGYGALQSAVQAFQGAGSQTPGLGFP
NSSYQANVPQLDAEVDRVKAKAQGVPLTELFDTLQTYLGSAYVNDFNMFGRTWQVVAQAD
GPFRDSVEDIANLRTRNDRGEMVPIGSMVKVTETFGPDPVIRYNGYPAADILGEADVNQL
SSAQAMAKLEELAQKVLPNGMDIEWTDLSYQQATQGKAALIVFPLAVLLAFLVLAALYES
WTLPLAVILIVPMCMLSALLGVYLTGDNNVFVQVGLVVLMGLACKNAILIVEFARELEMQ
GKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVLSHGAGAEVRQATGITVFSGMIGVTL
FGLFLTPVFYVALRKLANKPLVSHGTSTVATHAPVQTHA