Protein Info for ABIE51_RS00535 in Lysobacter sp. OAE881

Annotation: UPF0149 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 TIGR02292: yecA family protein" amino acids 13 to 198 (186 residues), 79.7 bits, see alignment E=1.1e-26 PF03695: UPF0149" amino acids 14 to 196 (183 residues), 87.9 bits, see alignment E=1e-28 PF02810: SEC-C" amino acids 217 to 234 (18 residues), 39.8 bits, see alignment (E = 3.2e-14)

Best Hits

KEGG orthology group: K07039, uncharacterized protein (inferred from 63% identity to psu:Psesu_0122)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>ABIE51_RS00535 UPF0149 family protein (Lysobacter sp. OAE881)
MKAAPNYLDDDQIERLAELLEQRAVPFKGFNLEALDGYLSALAVAPETVPFEQWHDAVWG
TPPRWKDEEEREQVQALLLGHWNMVNQRVRFGEDDLPDHLAPLLWLPENPEEEQDDELDV
GRDWAFGFFRAVELSEIKWDQWLDEHDWVDEIFLRFDRLASGEIVGEDPEAPGEPVSYRE
RLEIIASLPGMLADLHHLRIDTLTPREPIRREATPDRNAPCPCGSGKKYKKCCGAA