Protein Info for ABCV34_RS15845 in Castellaniella sp019104865 MT123

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 PF00580: UvrD-helicase" amino acids 10 to 271 (262 residues), 87.7 bits, see alignment E=1.1e-28 PF13245: AAA_19" amino acids 21 to 257 (237 residues), 39.5 bits, see alignment E=6.1e-14

Best Hits

KEGG orthology group: None (inferred from 72% identity to kpe:KPK_1173)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (591 amino acids)

>ABCV34_RS15845 ATP-dependent helicase (Castellaniella sp019104865 MT123)
MTSIHGLTAEQEVFATHVGGAFVHACPGAGKTRTIIARLVKIAATLPQRRGVAVLSFTNS
AVDEFRERCRAAGLDPLLKHPSFMGTLDAFVRHFVVLPACGAASTIRPIILDSWDRLDIN
IRLAGQYAFQGDAVSLDMFDPETNVIDPMKIGHAGLRNHVLQHQARYQQAAAHRRRGLLQ
AGYLSAGDARVQTLQLIRDPVNGGALCRALAARFHEVMVDEGQDCNPVDLQILSWLRAHG
VHVTFVCDPDQSIYEFRNGNPAGVQAFKETYLVDSRLGLTGNFRSSPAVCRLAATFRSAG
QVDQSVGHTANVAHPVLLLTYGGRSPTAMIGRAFLDRIAELNLDSANAIVLAHSGAVAQR
AAGVVPSDSNGSSRVESLARKTAEFWSPAATARSREAVVLAVETLLLDLMRLRQESEHLL
RTVERVGLDRRAHRRRALSFLMSLPKACGNADADRLAWIARVHVEAERLNLPLPAGVTVR
NFFRRPTNAQWSNHLQLPADLSLTCAKIHEAKGHEYGAVCVVIPPNRAPENRGEALFESW
EARTDAEAKRVLYVGLTRAQHLGALAVPIAFADRCVAVLTAGQVPHTRRDL