Protein Info for ABCV34_RS14620 in Castellaniella sp019104865 MT123

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1027 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 527 to 548 (22 residues), see Phobius details amino acids 856 to 877 (22 residues), see Phobius details amino acids 884 to 904 (21 residues), see Phobius details amino acids 910 to 934 (25 residues), see Phobius details amino acids 957 to 977 (21 residues), see Phobius details amino acids 989 to 1013 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1014 (1010 residues), 1069.2 bits, see alignment E=0

Best Hits

Swiss-Prot: 61% identical to MDTB_ECO81: Multidrug resistance protein MdtB (mdtB) from Escherichia coli O81 (strain ED1a)

KEGG orthology group: K07788, RND superfamily, multidrug transport protein MdtB (inferred from 70% identity to bbr:BB4431)

MetaCyc: 61% identical to multidrug efflux pump RND permease subunit MdtB (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-353; TRANS-RXN-92

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1027 amino acids)

>ABCV34_RS14620 multidrug efflux RND transporter permease subunit (Castellaniella sp019104865 MT123)
MNLSRPFILRPIATTLAMIAVVLAGLLGYRELPVSALPQVDFPTIQVTTLYPGAGPDVMT
ALVTSPLERQFGQMPGLSQMLSTSSGGSSRITLRFDLGLPLDVAEQEVQAAINAASNLLP
GDMPSPPIYRKVNPADTPVMTLAVTSPTLPLDQVRDLIEVRVAQKLSQISGVGLVSVTGG
QRPAVRIQVDPQALAAHKLTLADVRKAVTQSNVNQPKGNLDGPQRSLTISVNDQLKDPAE
YERLILAYENGAPLRLGDVAHVRRAAENLYQAAWFDHTPAVLLNIQRQPGANVIQVVDQI
QTLLPGLRQTLPTGVDLRVAADRTHTIRDSIDHVQIEMLLAIALVVAVTFVFLRTWRATL
IPGVVVPLSLVGTFGLMYLMGFSINNLTLMALTIATGFVVDDAIVMIENIARHIEEGENA
LTAALRGARQIGFTLVSLTVSLIAVLIPLLFMADVVGRLFREFAVTLAVAILLSLLISLT
LTPMMCARMLRPESEERHGRFLRGAGRAMDRLVTAYDRGLTWVLAHQLATLWFALGTLVV
TVGLYAGIPKGFFPQQDTGAIQAITQGPQTASFPVMSRLQQSAVERVLADPAVASVTSFI
GIDGDNTTLNTGRLQITLKPLTERRVRADAVIDRLNQALHAVVGLQVWLQPVQELSVEDQ
ISRAQFQMTVSSPNDAALALWAPRLIETLQRLPQLRAVAGDLQDHGLALNVQVDRDAAAR
LGVTQAAIDDALYDAFGQRLISTIYTQSAQYRVVLEAGAAQLDGGPQALAHIHVPTAGGG
VTPLSTVARFVPGVTRLAVQRLDQFPATTVSFNLAPGVALSDAVQAIEGARVSLGVPDSV
EIQFQGAARAFQASLSSTLLLLLAAVVTMYIVLGVLYESLIHPVTILSTLPSAAVGALLA
LWAGGVELDMIGVIGIILLIGIVKKNAILMIDFALDAQRERGLGPQAAIHEAALLRFRPI
LMTTLAAFFSAIPLMFASGSGAELRQPLGLAMVGGLLCSQLLTLFTTPVIYLMFERLAHR
RTAPDRS