Protein Info for ABCV34_RS13425 in Castellaniella sp019104865 MT123

Annotation: GTP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 PF02492: cobW" amino acids 15 to 195 (181 residues), 191.8 bits, see alignment E=8.4e-61 PF07683: CobW_C" amino acids 274 to 368 (95 residues), 84.8 bits, see alignment E=3.2e-28

Best Hits

KEGG orthology group: None (inferred from 80% identity to put:PT7_3311)

Predicted SEED Role

"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>ABCV34_RS13425 GTP-binding protein (Castellaniella sp019104865 MT123)
MNAANSARSTDSMIPVTVLTGFLGAGKTTLLRRILTEFHGQRIAVIENEFGEENIDNDLL
VQDSDEQVIELSNGCVCCTVRGDLIRTLNDLATRRDDGAVRFDRVIIETTGMANPGPVCQ
TFFMDDDIAETYRLDAVITVVDAKHGMATLDRQEEAQRQVGFADRILVSKKDLVNEADYE
ALRARLVRINPRASITPAHFGETDLTTLLDVSGFDLDTILDIDPEFLAEEEAHDHDHGHD
HDHHDHDHDDEDGHHACGPACGHDHHHAHHSDDIGAFVFRSNRAFDPERLEDFLGGIVQV
YGPDLLRYKGILYIKGINRRMLFQGVHMMMGAEPGKPWKASEKPNTRLVFIGRKLPQDIF
TQGLEQCLA