Protein Info for ABCV34_RS12045 in Castellaniella sp019104865 MT123

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 6 to 37 (32 residues), see Phobius details amino acids 49 to 75 (27 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 137 to 162 (26 residues), see Phobius details amino acids 182 to 204 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 8 to 104 (97 residues), 70.5 bits, see alignment E=7e-24 PF00528: BPD_transp_1" amino acids 29 to 211 (183 residues), 73.5 bits, see alignment E=9.3e-25

Best Hits

KEGG orthology group: None (inferred from 64% identity to hse:Hsero_0242)

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>ABCV34_RS12045 amino acid ABC transporter permease (Castellaniella sp019104865 MT123)
MNHEQLLYLLLGAWGTVLLSALTFIFSALLGLSIALMRVSDHPLVRGGAFGYINIIQGTP
LLVIMGICFYGPSILGFSDTSPLFAAVLALTVHAAAFLGEIWRGCIESVPKNQWEAAECL
GLNRIQRMFKVILPQAFKIAVPPTVGFMVQIVKNTSFASLVIGFAELSYNAKILNNSTFK
PFLYFGAAAVLYFLICYPLSWFSLRLERKLTVARS