Protein Info for ABCV34_RS10055 in Castellaniella sp019104865 MT123

Annotation: carotenoid oxygenase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 PF03055: RPE65" amino acids 27 to 473 (447 residues), 365.1 bits, see alignment E=3.6e-113

Best Hits

KEGG orthology group: None (inferred from 47% identity to gsu:GSU3417)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>ABCV34_RS10055 carotenoid oxygenase family protein (Castellaniella sp019104865 MT123)
MTQAAPPSGQPWLSGLAATLEIEHDYRPRVAGRLPAALRGTLYRNGPGRFDRGGMRKRHL
LDGDGMIQAFDFDGDGVRYRNRYVRTAKFLEEQQVGHYTRPTWTTRAPGGPWRNAGNRIR
SQAGVTVLLKNDRLYAFDEVGQPYGLDPRTLQTLGEQALGPAGVSLDYKAHTKTDPNTGD
WVLIAFQHGLRNHIHLVEHAADGTLRRHQRIVSPRASYIHDWFLTEHHVLILLHPIELSL
PGYLAGLRSFTESLHWDASRGNLLLVIDRSGQAPVSILEAPASFMWHSLNAYEQGGAIVA
DFVGYDAPDHFIGEQAAFRQIMTGAIGEARHPGLLRRYVIDPVRRRITEDILCERNCEFP
IVDPCAATRAHRYAYVTTAPGPSVFHSGLARVDMAGGRAEVIDLGPRTHLGEPIFVADPA
ARDERGWLLSLGLDGDSGTSFLGVFASDALADGPVARIWLEHPTPLSFHGYWQSA