Protein Info for ABCV34_RS10020 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 221 to 242 (22 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 296 to 324 (29 residues), see Phobius details amino acids 330 to 354 (25 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details PF01061: ABC2_membrane" amino acids 204 to 410 (207 residues), 27 bits, see alignment E=1.6e-10

Best Hits

KEGG orthology group: None (inferred from 85% identity to axy:AXYL_00239)

Predicted SEED Role

"Capsular polysaccharide ABC transporter, permease protein KpsM" in subsystem Capsular Polysaccharide (CPS) of Campylobacter or Rhamnose containing glycans

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>ABCV34_RS10020 ABC transporter permease (Castellaniella sp019104865 MT123)
MSKSNEERIKGWRSRREDGNYTVGSGVADWRLDPAALFEARATPAVLFKPLIARLQGEPH
DSVAARRAVYEAVQAELEAEIARSAVDENLAGFSRRRLRIIVRLLEQDIRAGVAVFEPGY
MPAKLVAEDERLAVAHARRVERRKQDEAREARRHASRNDIALEIEVEQDEAGDLAILRDR
LRVLHEGRPPDMAGKVRPAGRTLMAMFIYQLREMQGESRIALVWALVGPVVLLTLISSLY
ILMGTHYIMGMDVQTFALLGATTWIMFRQIAFRSSTAYVSARGLLNFQGVTPLMCALVQS
LIYVSVYLVVFAVLIGAGHALGLITLPVSWAGFMLFVVLMGCCGAAMGLLFGTIATFWRF
FLRLAPIIERFLQIFASVFFVSEQFPEQLRPWVLWSPFAHGMQLLRSAYFPAYQSHDASL
GYFLTSLVFLMVVALMAETLARPRVQPM