Protein Info for ABCV34_RS10005 in Castellaniella sp019104865 MT123

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 PF13432: TPR_16" amino acids 96 to 158 (63 residues), 17.5 bits, see alignment E=1e-06 amino acids 249 to 295 (47 residues), 15.9 bits, see alignment 3.2e-06

Best Hits

KEGG orthology group: None (inferred from 78% identity to axy:AXYL_00242)

Predicted SEED Role

"Vi polysaccharide export protein vexE" in subsystem Capsular surface virulence antigen loci

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (639 amino acids)

>ABCV34_RS10005 tetratricopeptide repeat protein (Castellaniella sp019104865 MT123)
MVDTAMENRRPVAGTDPQGATVRLREIIGRIRGAADPERDMAALEPALRQAKDGWRDVRR
LLVSPFVREGRFGPAIAALGVLIAVHPSRVEDRRLLASLFGRMEQWDRAIAEADAAAGIE
PGNAALHAVRIQLRVQGSRVAEAAEVGRATLALAQSEPGEAYAWMMAFVRNGDVAEAAGI
AAALDPEKLPNERVATIAVRALMEDGRTVAAIRFGDTALRAGHDCAALRSSLGLAHLRRG
TSADRKVHAVAHFEAGLQAAPADVRLLTLYGETLLRAGRYNEAVTPLARALELAPELEQT
RALYARALRHTLQYGEAADQWMRLVEKSPDKLLWQRAAIGALTQAGRQEEAEALFSRYIA
TRSARLPGTFQEALARMEEKLDTVPIPQARLDWAWSLRGDTSIERAAWEHRARWGHMIDH
LLLDWLECREERAEEAMHLLGELDTGERFFAPLLAAGRGVVVATAHVGPMYAGLMAMELV
GIPSRWLATAPSIARSSYSEALISTADQTEAQVAKACMRAINEGYVLCLALDGAINPAAP
RTTFEGQDVTYSGFASHLAYRLKVPSVFYVPRWENGRMSYTLEMLPAANPGEDAQAYSLR
WQKAYFERLREHLASEPENLRLSGGIWRHVTSADRSAQE