Protein Info for ABCV34_RS09780 in Castellaniella sp019104865 MT123

Annotation: nucleoside recognition domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 54 to 81 (28 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 122 to 148 (27 residues), see Phobius details amino acids 173 to 198 (26 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details PF07670: Gate" amino acids 182 to 273 (92 residues), 35.3 bits, see alignment E=6.8e-13

Best Hits

KEGG orthology group: None (inferred from 54% identity to put:PT7_3691)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>ABCV34_RS09780 nucleoside recognition domain-containing protein (Castellaniella sp019104865 MT123)
MSLAYLNTIRQRSTRMFLTITRIMVPVMVVVYVADRLGLVRLAGEALTPAMAMLGLPPQV
GLIWATTVLTNIYGGMASMAALSDSLQMNVAQVSALGAMMLFAHNVPTEQSVVRKAGASA
LFTGALRLTVGIVYGAAVAWICQAMGWLQDPVSFAWMGQDTALNQGPPDLLPWLISTARS
LLLVLGVIVCMVILLDILERLKITRLVTRLLTPILRLSGLEERAAPLTTVGVLLGLAYGG
ALIIDAAERENYSPRTRLLALSWLSLCHALIEDTILILALGADIWIILVLRGLVTLGILA
AIAALTQPHTWWGKRLAAQTDTRPVAPA