Protein Info for ABCV34_RS07615 in Castellaniella sp019104865 MT123
Annotation: electron transfer flavoprotein subunit beta/FixA family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 72% identical to ETFB_PSEAE: Electron transfer flavoprotein subunit beta (etfB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
KEGG orthology group: K03521, electron transfer flavoprotein beta subunit (inferred from 84% identity to put:PT7_1475)Predicted SEED Role
"Electron transfer flavoprotein, beta subunit" in subsystem Acetyl-CoA fermentation to Butyrate
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (250 amino acids)
>ABCV34_RS07615 electron transfer flavoprotein subunit beta/FixA family protein (Castellaniella sp019104865 MT123) MKVLVPVKRVVDFNVKVRVKSDQTGVDVGNVKMSMNPFDEIAMEEAVRLKEKGVASEVVA ISCGVAQCQETLRTALAIGADRGVLVQSDAELQPLAVAKLLAAVAGQESPSLVILGKQAI DDDANQTGQMLAALLDWPQATNASKLEVQGDRVLVTREVDGGLETVSLTLPAVVTTDLRL NEPRYVTLPNIMKAKKKPLETVTPEALAVDVTPRLKTLKVTEPAARSAGVIVPDVVTLVD KLKNEAKVVK