Protein Info for ABCV34_RS05795 in Castellaniella sp019104865 MT123

Annotation: flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details amino acids 308 to 324 (17 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 20 to 699 (680 residues), 900.8 bits, see alignment E=2.7e-275 PF00771: FHIPEP" amino acids 28 to 690 (663 residues), 893.7 bits, see alignment E=4.2e-273

Best Hits

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 79% identity to put:PT7_0758)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>ABCV34_RS05795 flagellar biosynthesis protein FlhA (Castellaniella sp019104865 MT123)
MNNFLDFLKTQGFGHARLMAGPVLILMVLGMMILPLPPFVLDLLFTFNIALSVMILLVAM
FTRKPLDFAAFPSVLLFATLLRLSLNVASTRVVLMNGHKGPAAAGHVIEAFGHFLVGGNF
AVGIVVFIILVIINFIVITKGAGRIAEVGARFTLDAMPGKQMAIDADLNAGLIGEDDARR
RRSEVSQEAEFYGAMDGASKFVRGDAVAGLLIMVINIIGGLIVGVAQHNMSLGDAGNVYT
LLTIGDGLVAQIPALVISTAAGVVVSRVATDEDVGQQVLGQLFSNPNVLFITAGILTLMG
LIPNMPHVAFLLLAAILGGVGWALHQRKQREQKVADSRPSQEQTAAVAAASEASWDDVST
VDPLGLEVGYRLISLVDHQQSGELLHRIRSLRKKFAQEMGFLPPVVHIRDNLEIKPTDYR
IQLFGVEIGRGVAQTGQWLAIDPGGVTAPVQGTPTKDPAFGLPAVWIDASLREQAQIAGY
TVVDAATVVATHLNHLMHRYGAKLLGRQETQQLLDHVGRDVPKLVEDLVPKTITLPQLQN
LLRSLLDEEVPIRDMRSILETVTEYAPRLASLNPAGTGPNQDELLAQTRVALGRAIVQHW
FAGEEELRVIGLDSRLERVLMQALGASGALEPGLAENLLGETQRHVQEQEDKGNAPVLVV
PPMLRASLSRFLRHHLPHMAVLSSAEIPEERMIRVTAVIGGSPA