Protein Info for ABCV34_RS05340 in Castellaniella sp019104865 MT123

Annotation: biopolymer transporter ExbD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details PF02472: ExbD" amino acids 10 to 134 (125 residues), 95.2 bits, see alignment E=1.8e-31

Best Hits

KEGG orthology group: K03559, biopolymer transport protein ExbD (inferred from 56% identity to put:PT7_0693)

Predicted SEED Role

"Biopolymer transport protein ExbD/TolR" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (137 amino acids)

>ABCV34_RS05340 biopolymer transporter ExbD (Castellaniella sp019104865 MT123)
MNFHHRRTHDEPEINLIPLIDVLLVILIFLAASTSFTQTRQLQVALPQAQAQALDTGQAL
DLAISRDGLYALNGHYLEAADDASLADALRRAAEGHPDTALRIDADGQASHASVVRALEA
ARLAQISRVRFLTQSRP