Protein Info for ABCV34_RS02785 in Castellaniella sp019104865 MT123

Annotation: DUF1932 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF03446: NAD_binding_2" amino acids 6 to 126 (121 residues), 28 bits, see alignment E=2.1e-10 PF09130: DUF1932" amino acids 195 to 266 (72 residues), 73.5 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: None (inferred from 66% identity to pna:Pnap_2165)

Predicted SEED Role

"3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>ABCV34_RS02785 DUF1932 domain-containing protein (Castellaniella sp019104865 MT123)
MQATHLGLIGYGEVGGIFCAGLGPQVDGVRAWDVKLADPAAAAPLRERAGQDGVTLCASS
AELCAASTLLVSAVTASNTVAVAREAAAHLLPGTVFLDLNSASPGAKREAAGLIEAAGGH
YVEAGVMTSVPPYGIRVPMLLGGPHAESLARRLASFGMDAKAVSAELGVASAIKMCRSVM
IKGLEALVIESYTAARAYGVEEHVLPTLQETFPSIDWTEQGRYFYSRVVQHGRRRAEEMR
EVANTVREAGFEPWMAAATAEKQDWVAGLAAQGLFDGVQPSDGWQGYADRLIAHAKA