Protein Info for ABCV34_RS01585 in Castellaniella sp019104865 MT123

Annotation: nitrous oxide reductase family maturation protein NosD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR04247: nitrous oxide reductase family maturation protein NosD" amino acids 35 to 409 (375 residues), 463.6 bits, see alignment E=3.7e-143 PF13229: Beta_helix" amino acids 89 to 226 (138 residues), 47.8 bits, see alignment E=1.9e-16 amino acids 165 to 315 (151 residues), 62.3 bits, see alignment E=6.4e-21 PF05048: NosD" amino acids 149 to 344 (196 residues), 182.2 bits, see alignment E=1.4e-57 TIGR03804: parallel beta-helix repeat" amino acids 166 to 204 (39 residues), 23.3 bits, see alignment 4e-09 amino acids 278 to 320 (43 residues), 30.1 bits, see alignment 2.9e-11

Best Hits

Swiss-Prot: 41% identical to NOSD_PSEAE: Probable ABC transporter binding protein NosD (nosD) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K07218, nitrous oxidase accessory protein (inferred from 67% identity to axy:AXYL_04549)

Predicted SEED Role

"Nitrous oxide reductase maturation protein NosD" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>ABCV34_RS01585 nitrous oxide reductase family maturation protein NosD (Castellaniella sp019104865 MT123)
MTRKLAAMAAGLAIAVGVSVPAGAAVIDVPAGTNLQAAITAATAGDTLRLAAGDYTGDLR
IDKPLTLIGPADRSAHILGTRKGRTIWVQAQDVTLQHLTIQHSGLSLSDMDAGVFLDKTA
TGAQILSNDIIDNSVGVYLWGVRDARVEHNRIVGNTGLRVNERGNGITVWNAPGSKVLNN
DISEGRDGIFSNNSRENVFSGNVFHHLRYAVHYMYTNDSEVSDNVSLGNEIGYAIMFSRR
LTVRDNIALDSQFQGLMLNATDDSTITGNVMNRAEKCVFVYNSNFNTLADNHFQGCQIGV
HYTGSEGNKIYGNAFVNNQNQVKYVGTRFIEWSEKGRGNYWSDMAAFDLDGDGIADTAYR
PNGLIDQVIWRAPNARLLLNSPAVTIVRWAQSQFPAILPGGVIDSTPLMVAPVTPTWEKS
KALP