Protein Info for ABCV34_RS01545 in Castellaniella sp019104865 MT123

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 190 to 212 (23 residues), see Phobius details amino acids 267 to 291 (25 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 359 to 381 (23 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 427 to 445 (19 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 286 (259 residues), 57.5 bits, see alignment E=1.2e-19 amino acids 272 to 450 (179 residues), 33.6 bits, see alignment E=2.2e-12 PF00083: Sugar_tr" amino acids 67 to 424 (358 residues), 76.6 bits, see alignment E=1.9e-25

Best Hits

KEGG orthology group: None (inferred from 55% identity to dac:Daci_2091)

Predicted SEED Role

"Putative sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>ABCV34_RS01545 MFS transporter (Castellaniella sp019104865 MT123)
MDTTLVADLPRVHKVTPKDVVIASWICFFAWTFAVYDFVLFGNLLPVLAHDFGWSAATAT
GANTWVTAGTAMVAFGVGPYVDRAGRKKGIVVAVIGAAIFSLLTAPMGWVMGLTGGLGFV
LLIVIRSLAGLGYAEQAINATYLGEIFALHYSSPDQARRRGFIYSLVQSGWPVGSVLAAA
SIAVILPMGGWEWCFIVAVFPAVFMVIAARHLKESPQFLARRHAEELLAAGRRPEALAYA
RASGISLEETSTPAAAAFKGESLRSTLVIGISFMLNWFGVLAFLILGTSLLTAETGKAIA
FDNALTILIISNATAFCGYLFFGWLGDRIGRRNAIGLGWLLCAASFQAMLMAPNGDFNLI
IAFYSAGLFFMIGPYSALLFFSAESFPVHTRATGGSLINAAGQVGSIIAGMLITASLTRG
WNWIDASFYWGVLPILASGLLIFAARNVDPRHVRRD