Protein Info for ABCV34_RS00515 in Castellaniella sp019104865 MT123

Annotation: site-specific tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 PF02899: Phage_int_SAM_1" amino acids 11 to 92 (82 residues), 72.3 bits, see alignment E=5.1e-24 PF13495: Phage_int_SAM_4" amino acids 12 to 93 (82 residues), 32.8 bits, see alignment E=1.2e-11 TIGR02225: tyrosine recombinase XerD" amino acids 13 to 301 (289 residues), 381.3 bits, see alignment E=1.5e-118 PF00589: Phage_integrase" amino acids 115 to 288 (174 residues), 180.3 bits, see alignment E=4.4e-57

Best Hits

Swiss-Prot: 51% identical to XERD_HAEIN: Tyrosine recombinase XerD (xerD) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 73% identity to bbr:BB1429)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>ABCV34_RS00515 site-specific tyrosine recombinase XerD (Castellaniella sp019104865 MT123)
MAISPSPFPTIDAFLDALWLEDGLADNTLSAYRRDLTAFAHWLRAAQDRPPESAHREDIQ
AWLAAQHQQTKASTANRRLAALRRFYLWALRRSLCHEDPCLGLHSARQPARFPKTLSEAQ
VDALLEAPDTDTTLGLRDRAMLETLYATGLRVSELVHLTVQDTSLNDGVVRVVMGKGAKD
RLVPLGAEALHWIERYLRESRPAILGARLCDALFATTRGAAMTRQAFWLLIRKYAHQADI
RVPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKTLHAQHHPR
A