Protein Info for DvMF_3153 in Desulfovibrio vulgaris Miyazaki F

Annotation: polar amino acid ABC transporter, inner membrane subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 transmembrane" amino acids 17 to 45 (29 residues), see Phobius details amino acids 56 to 80 (25 residues), see Phobius details amino acids 100 to 117 (18 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 17 to 122 (106 residues), 71.9 bits, see alignment E=2.6e-24 PF00528: BPD_transp_1" amino acids 38 to 221 (184 residues), 62.1 bits, see alignment E=3e-21

Best Hits

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 100% identity to dvm:DvMF_3153)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNE7 at UniProt or InterPro

Protein Sequence (233 amino acids)

>DvMF_3153 polar amino acid ABC transporter, inner membrane subunit (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MQYNFDWKLVLSGEYLQWIIDGVVVTCQISALSLVLAMALGTLIAVMRLSAVRPLVWFSA
GFTEFFRNTPLLVQIFFWYFGSDAVLPTAVNQWLYKQNFEFAAGVISLAVYTAAFIAEEI
RSGIFSIPRTQLEASRACGLTFLQAMRYVVLPQAFRIIVPPLISQALNLFKNSSLCMTIG
VMELTYMARQIESYTFHGFEAFTVSTLIYLTISLLVSFSITQYNKYFLRTIKY