Protein Info for DvMF_3102 in Desulfovibrio vulgaris Miyazaki F
Annotation: putative glycerol-3-phosphate acyltransferase PlsX (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 84% identical to PLSX_DESVH: Phosphate acyltransferase (plsX) from Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
KEGG orthology group: K03621, glycerol-3-phosphate acyltransferase PlsX [EC: 2.3.1.15] (inferred from 100% identity to dvm:DvMF_3102)Predicted SEED Role
"Phosphate:acyl-ACP acyltransferase PlsX" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria
MetaCyc Pathways
- phosphatidylglycerol biosynthesis I (5/6 steps found)
- phosphatidylglycerol biosynthesis II (5/6 steps found)
- superpathway of phospholipid biosynthesis III (E. coli) (9/12 steps found)
- CDP-diacylglycerol biosynthesis I (3/4 steps found)
- CDP-diacylglycerol biosynthesis II (3/4 steps found)
- oleate biosynthesis III (cyanobacteria) (2/3 steps found)
- superpathway of cardiolipin biosynthesis (bacteria) (8/13 steps found)
- phosphatidate biosynthesis (yeast) (2/5 steps found)
- diacylglycerol and triacylglycerol biosynthesis (3/7 steps found)
- palmitoyl ethanolamide biosynthesis (2/6 steps found)
- superpathway of stearidonate biosynthesis (cyanobacteria) (2/6 steps found)
- stigma estolide biosynthesis (2/7 steps found)
- anandamide biosynthesis II (2/8 steps found)
- anandamide biosynthesis I (3/12 steps found)
- superpathway of phospholipid biosynthesis II (plants) (9/28 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.3.1.15
Use Curated BLAST to search for 2.3.1.15
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See B8DJG2 at UniProt or InterPro
Protein Sequence (346 amino acids)
>DvMF_3102 putative glycerol-3-phosphate acyltransferase PlsX (RefSeq) (Desulfovibrio vulgaris Miyazaki F) MNNATIIAVDAMGGDFGPSVVVPGAIEAARDKGIALLLVGDQAKVQAELARIPLDGVAYD VVHASEVAGMDEKPSDILRRRKDASIQVACRLVRDGQAHGIVSAGHSGATVACGMFIMGR IPGVDRPALATIMPTEKNPIVLLDVGANVDCKPHHLFQFGLMADAFARDLLSCESPRIGL LSIGEEEGKGNTQVKEAYELFKLAQNGINFVGNVEGRDIFSGDVDVVVCDGFVGNVALKL SEGLSTSLGRVLKRELLSGLLPKIGTLLAKSAFRRFAQFVDYAEYGGAPLLGLQGIAFVC HGKSNSKAVCNAVKLAATFVEKKTNERLVKAISANEELTRYGKAIK