Protein Info for DvMF_3043 in Desulfovibrio vulgaris Miyazaki F

Annotation: protein of unknown function DUF6 transmembrane (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 54 (17 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details PF00892: EamA" amino acids 5 to 136 (132 residues), 71.5 bits, see alignment E=4.1e-24 amino acids 151 to 280 (130 residues), 71.5 bits, see alignment E=4e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_3043)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJA3 at UniProt or InterPro

Protein Sequence (323 amino acids)

>DvMF_3043 protein of unknown function DUF6 transmembrane (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MPLGGYGFVLLAAGLWALIGPLARYCLAEGVTPLEIAFWRATFGALFFGLHAARHGLWRA
PVRDAATFAAFGLVGVALFFGSYQLAVREGGAALASILLYTAPAWVALLSRLCFAEPLTR
AKLAALGLAMTGAFLICRSGGGLQGGASAAGIGFGLLAGFTYSLHYVFSRHFLHRHSPVT
LYLFCLPVGALALLPFVTFAPKGPLAWALLVLGMGLVTTYGAYMAYCEGMRRLSPTRVAV
VANFEPVLAALLAYWLWDELFPPSGWIGAGLVIAAVFCVVLDGARGEDKRDGGVSRAAGV
AESREMEEAGEDTGPARGHMPVE