Protein Info for DvMF_3026 in Desulfovibrio vulgaris Miyazaki F
Annotation: basic membrane lipoprotein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 47% identical to PBP_BRUA2: Purine-binding protein BAB2_0673 (BAB2_0673) from Brucella abortus (strain 2308)
KEGG orthology group: K07335, basic membrane protein A and related proteins (inferred from 100% identity to dvm:DvMF_3026)Predicted SEED Role
"Nucleoside ABC transporter, periplasmic nucleoside-binding protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See B8DJ86 at UniProt or InterPro
Protein Sequence (380 amino acids)
>DvMF_3026 basic membrane lipoprotein (RefSeq) (Desulfovibrio vulgaris Miyazaki F) MRKSVSAMLLVAAMLLMAALTGCGEDKKPAEAPKAEQKPAAAAPAPAAPAKEMQVGFVYV SPVGDVGWSWAHDQARKAIAEMPGVTTSFVESVPEGADAERVIQNMARKGYDIIFTTSFG YMDPTLKVAEQFPNITFMHCSGYKTAPNMSNYFGRMYQARYLTGMVAGAMTKSNILGYVA AFPIPEVIRGINAYTMGARAMNPKAEVRVVWTKTWYDPATEKEAAKSLLDVGADVIAQHQ DSPGPQEAAQERGVYSVGYNSDMSQFAPKSLLTSAMWNWTPFYKDVVEKVRKGEWKSGAF WPGIETGIVGIAPYGDMVPQDVRSKVDARKAEIVAGTYKVFSGPVKDQNGAVRVPEGQVL SDQDMLGMTWFVEGVVGSTQ