Protein Info for DvMF_2904 in Desulfovibrio vulgaris Miyazaki F

Annotation: protein of unknown function DUF490 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1937 transmembrane" amino acids 52 to 75 (24 residues), see Phobius details PF04357: TamB" amino acids 1547 to 1937 (391 residues), 193.1 bits, see alignment E=4.5e-61

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to dvm:DvMF_2904)

Predicted SEED Role

"gramicidin S biosynthesis grst protein (EC 3.1.2.-)" (EC 3.1.2.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.2.-

Use Curated BLAST to search for 3.1.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DS86 at UniProt or InterPro

Protein Sequence (1937 amino acids)

>DvMF_2904 protein of unknown function DUF490 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTDPRRHTGPDAAPTAPPSPPALPENAGGSAVRASEPTPPERKNRTRRILGAAGRAALAV
LLILLLTLGIGTAFLRSAPGEAWLAAQAVRMLAAAGITATLDSLEGPLPERLRLRNLTLS
DGRGPWLHLDEAKVRLRPLALLHGTLDVELVRLSAPRWERMPDLPATGSPKPKTPTGFDP
PALPLRVRLDELDVRRAVLGMDLLGRKLAFSLRGALDAPPGSVSVRMNMDREPLHADYAP
NTSAPDAAAPGGLALALSYTARTGDLQLDAAGGEDTGGLLGCLIGQPGLPAYGLRMAGHG
TGGRWRGWLAASAGDLLRLDGEADVELDTSAPGIAAWLAGRKDSAWRADLRLTAQNGADA
PAELRRWMGGTGSPGASGAPDSPVMASPIKGVALQAQASGNFGRTGMTLDIPRLTLDGGA
WNLELADATLHAPAGTAFVAPTDLRATVRTRVHDVAALLPDAPLRAAEAALALNGSLNTP
DGDALALRGRIDLRGVAAVAGTDIAVDMDGNLRRTGQRLILDGLRLALDGSRPAAGPAAV
GGPGGVDGADGANGPDGADGADGTGGRLDAARPGKGKGNTAARPSTAESPPVPLAILTGS
GTWDAATRHATATLAAELPDLPALSALPLPLEATHPTPANGRGAAPRTSGSSSPADSPLL
AGSARMEADVDLRLPPEAPGAGSPGAAPAASAPGLNMTVRALGAGLRWNAPQARYLLGPS
PALSAEVTGGYAAPLRLELRHLTTARLSGRGTASLGAPAPHVGGTPGLLPPVAGTTLLDA
SARFTVTGVNGLLAPDEGATGQTPLPAAASDTLTLNLDARGTLAAPTARLTAALPHLELP
VGTVRGLAARLDADLRLPLDHPVAAARTAESAAIGRIVPAPLPTAAVSGARGLLDVSAVS
ALNAPLAVAANWWLEQRNGAGDARLEITRAEGAGLRGLAALAASWNDMRKARDTVSAPAF
SGPILSGTVDLAVADWTALSRAAGTSLSGDDARLRIWLGNDAPLPSRADAGRTAGSSPKT
HKPAQHTAASPATGTGTGSGTMARASRTAPHGSAIPLHAEATANRLAVGGVATLDALSLT
LRLPNAGDMPPTTRGTARLRTGPGTAAGLAWDAADATLDLRDDNAGSPGAAFGLSLRGRS
TANVRGGYDAAAQILRLDTLHLSDAAHAASVDLTRPADIQLAGGVRMDGLHLALSATPPL
SQPAAPPLGQASPPAQQGGNATGRPAAHPRATAAPATGTLDLSLGLRDGGNTNAATPDVV
LDAALTDVPLRVLRLAADLPLPEGRISGSASLRGQGGSGSGAFVLEAEDVAYPDPRQTPA
AFRLSGTIRPAVPDSAAAESGSPARRAPASSSGTGLLHATLSAHGLQADMAEAEATLPLR
FNSGLPRPDLAGDMTADIRWRGPMAPVWRFVPLADRHLSGMGSLTASLRGPVGAPRVEAE
AFLCGGRYEDLVSGVLLTDIRMDALHEDDGTLSIRARLGDGRGGTAAFEGRLSPPPDAGF
AAAHVPDAAPAAAPGAAPSAAPPSTGTGQPASPPPAARHGLSRDLAPRIDLRGQLLRLSP
LHRDDLSLTLSGSIEANGPLTAPLVRADITVPEGELRLLRGLGGGVTTLEVTEKAVAAAT
LPANPVLPAGSPPTAGLTPHAAPGSSAESSPMAATGPMDAPPTASAAGPSMSSTGPRLDL
RIVAPQRFFIRGRGLDSEWRGDLRVAGSAASPALTGTLSPVRGRFDLLAKPFSLSRGNIT
FTGEQPPNPALDLDLTNEGPAVTAVAHVGGTARRPALALSSTPPLPQDEVMSYVLFGKPL
TELSRFEALQAANALRTLSGAGGDFDVLTSVRRTLGVDVLRVGSSDPARQRTTTAPRDPS
LSRTSSMSGASASGEQARPTLEAGKYLLDNVYVGVEQGTEAGATGARVEVELLPRLNLEG
RSSPTSSELGIMWKKDY