Protein Info for DvMF_2707 in Desulfovibrio vulgaris Miyazaki F

Annotation: putative PAS/PAC sensor protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 TIGR00229: PAS domain S-box protein" amino acids 223 to 317 (95 residues), 43 bits, see alignment E=2.4e-15 amino acids 338 to 452 (115 residues), 24.9 bits, see alignment E=9.4e-10 PF13426: PAS_9" amino acids 226 to 316 (91 residues), 40.9 bits, see alignment E=6.4e-14 amino acids 347 to 444 (98 residues), 31.8 bits, see alignment E=4.3e-11 PF00989: PAS" amino acids 231 to 320 (90 residues), 35.9 bits, see alignment E=2e-12 amino acids 333 to 443 (111 residues), 25.9 bits, see alignment E=2.6e-09 PF08448: PAS_4" amino acids 338 to 446 (109 residues), 52.3 bits, see alignment E=1.9e-17 PF07022: Phage_CI_repr" amino acids 580 to 638 (59 residues), 42.1 bits, see alignment 2.8e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2707)

Predicted SEED Role

"putative PAS/PAC sensor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DIY5 at UniProt or InterPro

Protein Sequence (640 amino acids)

>DvMF_2707 putative PAS/PAC sensor protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTSNEHMTSADLVAFYAPRLDAMDAPALLLDDDGGVLYANKPARLLRGAGGDAEHATETK
GPRPRLSAPGCPARAHGWLHDEVPPVPQGGTPVRESRTRITLPDGAGIRQISWTCVAVPV
PGTGGGSGTDKGEKAYLDGGKRAHNGESPRQAGNGGTLRHAGMQEMRGPNEMDEADETDE
MDGADGADDRSSENDTGSAICPRHPARTIHLAWGRLRTTEGGQEMGFTILPNGVIQAVSP
ALCAICGYTRDELVGRSAREFYFTSTARKRIVSQLIKRAEVENGEVTLRRKDGSPLALWY
TAESIRDAAGRMVAYSGYFQERPFAFSSKLASDFSRVVDALPGLAWVCGRDLRIVAVNDA
YLAAYGRTRDEVMGRTEYDFLPPELARYPVEAALKVFEEKRELEHPAVPHLLDPSVWYRV
IRRPIFDDNRQEVIGLLGIAQDISAKVVQENAFIEQLHTHQGDVVVVTDDQGRILRRSRQ
TLTPAIFGRQEPYDAYTLDMGPVLDLLHESDLPAVRQALLRAMREHREQHFECRIRNLSG
SYSTVHARLVYNDTIYGEPRVYVVARDVSGEMGLRQAPMVLERLKEAAGARTDRELASFL
NVSAASISNARKNGRIPPDWLIDAGLRTGRSIDWLVRGVV