Protein Info for DvMF_2488 in Desulfovibrio vulgaris Miyazaki F

Annotation: phosphate binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02136: phosphate binding protein" amino acids 1 to 278 (278 residues), 217.3 bits, see alignment E=1.3e-68 PF12849: PBP_like_2" amino acids 33 to 265 (233 residues), 162.3 bits, see alignment E=3.2e-51 PF13531: SBP_bac_11" amino acids 41 to 275 (235 residues), 36.9 bits, see alignment E=5.3e-13 PF12727: PBP_like" amino acids 59 to 221 (163 residues), 53.2 bits, see alignment E=3.3e-18

Best Hits

KEGG orthology group: K02040, phosphate transport system substrate-binding protein (inferred from 100% identity to dvm:DvMF_2488)

Predicted SEED Role

"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMY8 at UniProt or InterPro

Protein Sequence (280 amino acids)

>DvMF_2488 phosphate binding protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MRRLRAVLSLVVVLALGLATAATAAPLDAFAPQSGLTGSLDIAGGTAHIPVMKEAAKRIM
TVNPALRISVAGGGSGVGVQQVGEGLVAVGNTGRPLTEAEVQKYGLVSFPFAIDGVAVVV
SPANPVNGLTGKQVADIFAGTVTNWKDVGGKNAPITLYTREDGSGTREVFVEKALKKGPQ
AATANVVNSNGAMKTAIAQDPNAIGYVGIGHLGESIKGLHFDGMVPTQENAASGAYTVTR
KLYMNTKGAPQGLAKAFIDYIFSPEGQEITKASGYIPLDR