Protein Info for DvMF_2455 in Desulfovibrio vulgaris Miyazaki F

Annotation: hemerythrin-like metal-binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 TIGR02481: hemerythrin-like metal-binding domain" amino acids 5 to 129 (125 residues), 96.3 bits, see alignment E=7.2e-32 PF01814: Hemerythrin" amino acids 13 to 129 (117 residues), 49.4 bits, see alignment E=3.2e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2455)

Predicted SEED Role

"hemerythrin-like metal-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMV6 at UniProt or InterPro

Protein Sequence (151 amino acids)

>DvMF_2455 hemerythrin-like metal-binding protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MRHVEWSNRFSVGIPELDAQHARIIELLNDMAEAAASPEDGSRLRAVLSGLKAHAAAHFS
AEEAVVGQVSPELLTFHQGEHLKFLSRVREFTLALDADAHPPMLPLEMFHFLKSWFEDHI
LGVDMQYAARLRHGFDEARGPAAGTDSDPSA