Protein Info for DvMF_2311 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1414 transmembrane" amino acids 598 to 621 (24 residues), see Phobius details amino acids 638 to 666 (29 residues), see Phobius details PF13514: AAA_27" amino acids 1 to 204 (204 residues), 62.3 bits, see alignment E=5.1e-21 PF13476: AAA_23" amino acids 7 to 54 (48 residues), 30.4 bits, see alignment (E = 6e-11)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2311)

Predicted SEED Role

"DNA double-strand break repair Rad50 ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DIF4 at UniProt or InterPro

Protein Sequence (1414 amino acids)

>DvMF_2311 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MYIQRAHIDGFGVLAGQTIQQLSPGLSIFLGSNEAGKSTCLDFFRAMLAGYPRSRAAHRV
PLSGRAADAGGTLTLHTDRCGVVRLTRRPGAHGGTLTFTDANGTPLDAELAAALLHGVTP
DLYRNIYGFSLSELQEFSSLSAEGARNVLLGAGAGQGLRPPSQLLDDLAGRMGALYLPEG
RKPPLNEALKELETLRATLRTHERDTARYDALSAELDDLTARLAGVRADRAGREAEHRAL
ERRLGVWRQWQELVAVEGQLARLDVVVERFPQDGKARFERERERAAERGLRAQGLRGQLA
TLDATLAQRTPDARLLAAAPELRTLLERKASYRNARAALPALLADLERNRADRERLLAIL
GAGWTPERVRGFDRSLFTREAIATHEGAMDAAGADLRQTRAERDRRAAEHESARHAVELA
QAQTDALGADFVDTLGAEQAERLRTLRAQAGAAQAELPGLRAEQGVQAAALARSLTDISP
GWTPDTLRGFDTSPRAREALAARARTVTHAADAAREAARRADELAAQLDDLSARRDQAIM
AARAIAAPGREELDRRTEAVRRLRHVVNGLALETERTTEAARAERDHAANAPEARTSVAL
LALGGVLLAGGALSAGLLLAAMRGALDISAASPLAGLAPFAAMGLAPVYLCGVAALCGLA
LLAAGWPRRDAAEQTTHAARATQLAARHRELAERRDALRADAARLLREAGISDAEASPDV
SGLDGSVPGVSGLADRVDMTERALERARDERAKRDRADAEAAARESDCATLRARHMQALH
AREAAEAALQQARADWAAHCAALALPESFTPEAAPGLFDRVEACMARAAQADALAARVAA
LAAQVTALADMARRVPAIAPLCPNEADGPAMTDEAAAALLAGVDRLLADLRAAEARRQER
ERALAELAARRDREQQALAAVQDADAALHAATATAGAATDAWRAWLAQRGLSPDLTPATA
RDALGVMDDWLRLDNEAAGLAARRAALDAELAALETPLARIAADCASALPDAARGDDPVA
TLDALAAAARGDDPVATLDALAAAAQTAVAMAAERDRLAARHAELRAELHEAEAAHDAAK
AAVDELLAAGDAADGEDFLRRAASFAERQELLRRKGDLTDHLTTALPDISVPATGSGSDG
PSATPQADPLAALRAEMASADREAMQARCDELAGELAALAAQEAELVDKAAALRVQREQV
TTADEVAALRRQEAALLESARQMALEWSRNALARHLIDTARRRFERERQPHVIREAAAIF
RTITGGRWQSIAASLEDGVPRAVPADGEPVPHEHLSRGTREQLYLALRLGYVRTHALHAE
PLPLIMDDILVNFDPERAARTAAALAELCGKRDGRDDVAPNAADEPPNDAATIAGGKPHQ
ILFFTCHPHTVDMLRTAAPDAALFTVERGAITAA