Protein Info for DvMF_2198 in Desulfovibrio vulgaris Miyazaki F

Annotation: DEAD/DEAH box helicase domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1198 PF04851: ResIII" amino acids 116 to 255 (140 residues), 25.8 bits, see alignment E=2.2e-09 PF00270: DEAD" amino acids 117 to 289 (173 residues), 96.1 bits, see alignment E=4.9e-31 PF00271: Helicase_C" amino acids 401 to 507 (107 residues), 49.4 bits, see alignment E=1.2e-16 PF09369: MZB" amino acids 768 to 847 (80 residues), 74.4 bits, see alignment 2.3e-24 PF13482: RNase_H_2" amino acids 1066 to 1172 (107 residues), 23.5 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: K06877, (no description) (inferred from 100% identity to dvm:DvMF_2198)

Predicted SEED Role

"FIG003033: Helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQM2 at UniProt or InterPro

Protein Sequence (1198 amino acids)

>DvMF_2198 DEAD/DEAH box helicase domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MPHAPEDSRLPGTSASFNPTDTPGQGTAPAAPAAASSPRNTATIPDAPDAPRAPLNFDAD
NPVRDYITALLASPFGRQVTHHRALPAREADHAPNRRPWAKAIRDILARNGIGDLYTHQA
RATDLIRAGRHVVVATPTASGKTYVYNLPVLERFLSDPDARALYLFPLKALAQDQLSTFT
GLTAAWPDDARPRAAIYDGDTTDHFRRKIRQNPPTVLLTNPEMLHLAILPHHQQWTSLLA
SLAFIVVDEVHTYRGVLGAHMAQVFRRLLRVCARYGAHPTFVFCSATVGNPGELAANLTG
LGGDLENKNLVGEGVSFPHTPIPPKFSNEAIHAPHPTGISGHEVHADSAKGVKGARPPCG
EAGGSASCDINVITESGAPQGLRHFVFVNPDDSPSTAAIQLLRAALARGLRTIVYCQSRR
MTELISMWAAEKAGPYRDRISAYRAGFLPEERRDIEARMAGGDLLAVISTSALELGIDIG
GLDLCILVGYPGTVMSTLQRGGRVGRAQQESAVILVAGEDALDQYFVRHPNEFFDRPAEH
AVVNPDNPVIAKRHIECAAAELPLPADEPWLAAPGAATALAELEAEGLVLRSADGTTLLA
ARKRPHRHVDLRGSGNTFTIEDGDGNVIGSVDGHRAYRETHPGAVYLHRGRSWVITRLDP
GAQKVVAEQARVSWFTRVRANKTTEILDIHDQCVACGTRVFLGKLRVTETITGYEKRSVS
GQRLLSVVPLDAPPFVFETEGLWFEIPDAARIATENELLHFMGAIHALEHAAIGILPLLV
MTDRNDLGGISTPMHAQVGRPAVFIYDGLPGGAGLTRAAFAEADALFRATRAAIAECPCE
TGCPSCVHSPKCGSGNRPIDKAGALFLLDRMASGTPESDPVQPGLEQGGKQGEEMNIFEE
EAGVKSRGAAPDPVGGSYIPQTPFLGPGDDARSGHHHPDETARHDFQYMEEGDTRYRPMP
TGHTGTERTAPSRPDSDPRPTQGHVTAHLPRKHTMTTSPRDTGPLPASPAAGKTDGRIIA
PVGRYMVLDVETRRAAAEVGGWHRADRMGVSVAVLYDAADDSYTPYEQDAVPEMLDRLRA
ADLVVGFNISRFDYAVLSPFAPYDLHTLPTLDMLTKVKDRLSYRISLDNLAQTTFGTPKS
ADGLQALQWWKEKRLDLITEYCRKDVEITRALFLHGREKGYLLFTNKAGQAVRVPVAW