Protein Info for DvMF_2117 in Desulfovibrio vulgaris Miyazaki F

Annotation: Tetratricopeptide TPR_2 repeat protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 PF13432: TPR_16" amino acids 15 to 57 (43 residues), 22.6 bits, see alignment 8e-08 amino acids 104 to 158 (55 residues), 21.7 bits, see alignment E=1.5e-07 amino acids 137 to 190 (54 residues), 24.7 bits, see alignment E=1.7e-08 PF13181: TPR_8" amino acids 97 to 126 (30 residues), 24 bits, see alignment 2e-08 amino acids 129 to 159 (31 residues), 13.4 bits, see alignment 4.8e-05 PF07719: TPR_2" amino acids 97 to 126 (30 residues), 28.9 bits, see alignment 5e-10 PF00515: TPR_1" amino acids 97 to 127 (31 residues), 27.8 bits, see alignment 1e-09 PF13414: TPR_11" amino acids 104 to 142 (39 residues), 31.9 bits, see alignment 5.5e-11 PF14559: TPR_19" amino acids 105 to 150 (46 residues), 32.6 bits, see alignment 5.4e-11 amino acids 139 to 190 (52 residues), 28.8 bits, see alignment E=8.2e-10 PF13374: TPR_10" amino acids 129 to 156 (28 residues), 15.5 bits, see alignment 9.4e-06 amino acids 164 to 191 (28 residues), 23 bits, see alignment 4.1e-08 PF13174: TPR_6" amino acids 130 to 159 (30 residues), 12.4 bits, see alignment 0.00014 PF07721: TPR_4" amino acids 164 to 187 (24 residues), 17.1 bits, see alignment (E = 4.3e-06)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_2117)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DQE1 at UniProt or InterPro

Protein Sequence (207 amino acids)

>DvMF_2117 Tetratricopeptide TPR_2 repeat protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKDKYDDIDEYIADLRAEIEKSENCANHHYNLGVALLHKRDFVAAEESFLSAVRNSPRLG
EAYVQLGGICLQRGDLDGCLRYNEEAAQCRAKFPVPWSNIGFVHLQRGEPEEAIKALKKA
LKWDPDFIQAMATMGAAYFMQGDYEASIQISREAIKREPGFGPAYNNLALAHFERGEFAQ
AVQFADQAAACGFEVRPEFLKDLEAHR