Protein Info for DvMF_1879 in Desulfovibrio vulgaris Miyazaki F

Annotation: ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 839 transmembrane" amino acids 683 to 699 (17 residues), see Phobius details amino acids 714 to 728 (15 residues), see Phobius details PF00196: GerE" amino acids 784 to 834 (51 residues), 50.8 bits, see alignment 1.6e-17

Best Hits

KEGG orthology group: K03556, LuxR family transcriptional regulator, maltose regulon positive regulatory protein (inferred from 100% identity to dvm:DvMF_1879)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMH8 at UniProt or InterPro

Protein Sequence (839 amino acids)

>DvMF_1879 ATP-dependent transcriptional regulator, MalT-like, LuxR family (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MARPRRTDIPYFSPRLKARLHEALNMRSVFIEAPSGYGKTTIAQNYLRERLPEGATWVRH
VCVEESPQAAWRRFCQTMQKVDAHTGRTMQSYGLPDEDSAGHLASLLRELPCSTPFWLVL
DDFHHLAPHVPAPIWKAFLEHEAAQLRLIVVTRPVATRILPYEKAGILRLNADDLRLTEA
ESREYATRAGIALNEAQAQELHRRAEGWIIAATLYLRRWNERGAFAPASTQTHDSGVDGL
LRDVVWDNLDEAGQECLLRLSPFDAFSAEQAAFLLGKARLTQKTWAALQHNAMLRHDPAS
GLYYPHSTLLDFTRRIFAELPEETRRDALLAAGDWCARSGDLENAFVFYYRLRDYERILA
LDLSGMKGEGLLDMPGVAYVPAIRDIAANSTRAMKATHPLSAIALALDLLSANCHEEFGA
LFAELADIVETEPFAPHQRDYLRGELRLLESFTCYNDIAAMGVRMLEALQLAGRQTAMVR
LDDSWTFGNVSVLFMFHREPGRLDGELADMQTYCPHYLALSGGHGAGGPELMEAECRLHR
GDADPAEISGYKARHQAALREQASIVIGAEFLLGRVALLRGNAAALADAMDNLTGIAGQF
PQRANRMAADMARSFLMSLLHQPDEMAHWLREATPGSLARRFFVQVLPFAELCRARYLLL
SGKPELLLGENEAALGLASALNYSLALTYGHLHGAAAWFMLGKRDAAADSLRAALALAVP
DGLLLPFAECWPWIGPLLKKMHPGVCPEMPPAFAADVFSLAERLEAGRRAVADTLYSARG
RFGLSPREDEVARLMADGLSYGEIAQHLCISLNTVKTHLKNAYQKVGTSSRSDMKRLLS