Protein Info for DvMF_1807 in Desulfovibrio vulgaris Miyazaki F

Annotation: protein of unknown function DUF6 transmembrane (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 127 to 144 (18 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 275 to 292 (18 residues), see Phobius details PF00892: EamA" amino acids 12 to 143 (132 residues), 97.5 bits, see alignment E=7.3e-32 amino acids 157 to 290 (134 residues), 87.6 bits, see alignment E=8.7e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1807)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DMA7 at UniProt or InterPro

Protein Sequence (320 amino acids)

>DvMF_1807 protein of unknown function DUF6 transmembrane (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MPAPRTLPVSSATLALLLAMLLWSSSFIAMKVALEGFDPMVVVFGRMGISSAVFLALWRN
FRHVRYRKGDWKRLGAMALCEPCLYFVFEAYALRYTSASQAGMIVSVMPLCVAVAAWIVL
GERLARRVWSGFVLAIIGVIWLSLGGTSSDNAPNPLLGNLLELCAMVSATGYVINAKKLS
ATYPPLFITAVQSLAGSVFFLPLLFLPTTQLPDAFPLLPTLSVVYLGTCISLGAYGLYNF
GVSRLPAGQASAFINLIPVITLLMGRVLLGDQLTPQQYAASALVLVGVLLSQGRGATVPD
RAAPDEAAPNGTASQPGGKK