Protein Info for DvMF_0989 in Desulfovibrio vulgaris Miyazaki F

Annotation: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 PF12837: Fer4_6" amino acids 9 to 30 (22 residues), 28 bits, see alignment (E = 3.7e-10) PF13237: Fer4_10" amino acids 9 to 56 (48 residues), 27.6 bits, see alignment 5.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0989)

Predicted SEED Role

"Ferredoxin 3 fused to uncharacterized domain" in subsystem Nitrosative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPN7 at UniProt or InterPro

Protein Sequence (293 amino acids)

>DvMF_0989 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKTTRNILEIDEERCDGCGACVLDCAEGAIAIVDGKAKIVSDSFCDGLGACLGSCPQGAL
RIIQRDAVPFDEDAAMEHVRKRDGAQPRTGDHHSAQGRPDGHGVHGHYGLARQAGQGAGH
GPGHGHGGGHGGGHGGGHGGGHGGCPGSMIRSFAKSEAPMFGVAEGPVSGPGHWPLKIRL
VPPTAPYLKDADVLVAADCAAAASPLFHSHFARGKVVLIGCPKFDDTDAYAQRLAEILAT
SGIRSMTVLRMEVPCCRGLTAALAKARELSGTNVPLNEMVMTCQGAPAPTPLA